Tuning Neural Network Models for Better Accuracy
Overview
Teaching: 15 min
Exercises: 50 minQuestions
What is model tuning in Deep Learning?
What are the different types of tuning applicable to a neural network model?
What are the effects of tuning a particular hyperparameter to the performance of a model?
Is Jupyter notebook the best platform for such experiments?
Objectives
Tweak and tune deep learning models to obtain optimal performance.
Describe the common hyperparameters that can be varied to tune a neural network model.
Understand the steps of post-processing and the set-up required for post-analysis.
Introduction
In the previous episode, we successfully built and trained a few neural network (NN) models to distinguish 18 running apps in an Android phone. We tested a model without hidden layer, as well as a model with one hidden layer. We saw a significant improvement of accuracy by adding just one hidden layer. This poses an interesting question: What is the limit of NN models in achieving the highest accuracy (or a similar performance metric)? We can intuitively expect that increasing the complexity of the model might result in better and better accuracy. One way we explored this (in the previous episode) was by increasing the number of hidden layers. We can continue this refinement by constructing models with two, three, four hidden layers, and so on and so forth. The number of combinations will explode quickly, as each layer may also be varied in the number of hidden neurons. Every modified model must be retrained, which will make the entire process prohibitively expensive. We inevitably would have to stop the refinement at a certain point. All these experimentations constitute model tuning, an iterative process of refining an NN model by adjusting hyperparameters to yield better results for the given task (such as smartphone app classification, in our case).
In this episode, we will present a typical scenario for tuning an NN model. Consider the case of 18-apps classification task again: All the models have 19 input and 18 output nodes. The hidden layers of the model can be greatly varied, for example:
- A model with no hidden layer
- A model with one hidden layer of 18 neurons
- A model with two hidden layers of 18 neurons each
- A model with two hidden layers of 36 and 18 neurons, respectively
- … and many more!
What Are the Hyperparameters to Adjust?
The following hyperparameters in a model can be adjusted to find the best-performing NN model:
- the number of hidden layers (i.e. the depth of the network)
- the number of neurons for each hidden layer (i.e. the width of the layer)
Collectively, the size of network inputs and outputs, plus the number of hidden layers and the number of neurons on each hidden layer, determine the architecture of an NN model.
The learning rate (step size) and batch size (the number of training samples before updating) can also be adjusted. Although they are not part of the network architecture per se, they may affect the final accuracy of the model. So it is also important to find the optimal values for these hyperparameters as well.
Basic Procedure of Neural Network Model Tuning
The tuning process involves scanning the hyperparameter space, re-training the newly modified network and evaluate the model performance. A basic recipe for NN model tuning involves the following steps:
-
First, define the hyperparameter space we want to scan (e.g. the number of hidden layers = 1, 2, 3, …; the number of hidden neurons = 25, 50, 75, …).
-
Define (build) a new NN model with a specified hyperparameter setting (number of hidden layers, number of neurons in each layer, learning rate, batch size, …).
-
Train and evaluate the new model. From this process, we will want to compute and save the performance metrics of this model (i.e., one or more of: accuracy, precision, recall, etc.).
-
Repeat steps 1 and 2 until all the configurations we want to test have been tested. As you may anticipate, we will have to do a lot of trainings (at least one training per model).
-
Once we obtain all the performance metrics from each model, we will analyze these results to decide the most optimal NN model hyperparameter setting to achieve the best performance.
The following diagram shows the cycle of NN model tuning:
The optimal configuration is determined by the trade-off of the maximally achieveable performance metrics (such as accuracy), versus the computational cost of training even more complex NN models.
Preparing Python Environment & the Dataset
Before diving into the model tuning experiments,
let us prepare our Python environment in the same way as in previous episode,
then load and preprocess the sherlock_18apps data.
(If you have just completed
the previous episode on NN modeling for the sherlock_18apps dataset
within the same interactive Python/Jupyter session
that will be used for this hands-on activity,
you do not need to perform this step.)
Loading Libraries &
sherlock_18appsDatasetFirst, load the Python libraries and the
sherlock_18appsdataset by running the commands in thePrep_ML.pyscript. In your current Jupyter session, use the magic command%loadto run the data preparation script:%load Prep_ML.pyPress Shift+Enter to execute this command; the contents of the script will be loaded into the active cell. Once loaded, press Shift+Enter once more to execute all the Python commands read from
Prep_ML.pyand get your environment ready. Please refer to “Data Preprocessing and Cleaning: A Review” section on the previous episode for the contents ofPrep_ML.pyand the expected outcome.As the last step, do remember to do one-hot encoding for the labels (
Prep_ML.pyalready takes care of one-hot encoding in the feature matrix):train_L_onehot = pd.get_dummies(train_labels) test_L_onehot = pd.get_dummies(test_labels)Next, load the TensorFlow, Keras, and visualization libraries:
# Import libraries import tensorflow as tf import tensorflow.keras as keras from tensorflow.keras.models import Sequential from tensorflow.keras.layers import Dense from tensorflow.keras import optimizers from tensorflow.keras.model import save_model, load_model import matplotlib.pyplot as plt
Python Library: Gathering Useful Tools into a Toolbox
Programming Challenge: Writing a Function for Data Preprocessing
From this point, we will program in Python more intensively as we need to repeat many computations that are very similar (or identical) in nature. As the first case, we have repeated the data preparation above, which was first used in the previous episode.
Many parts of the program written above.
Instead of calling the
Prep_ML.pyfile everytime we want to preprocess the dataset, we can create a function that performs the preprocessing for us. We can save this function to a file calledML_toolbox.py, so it can be imported for easy use.def prep_ml(df): """ToDo: Summarize the dataset""" """ToDo: Delete irrelevant features and missing or bad data""" """ToDo: Separate labels from features""" """ToDo: Perform one-hot encoding for **all** categorical features.""" """ToDo: Feature scaling using StandardScaler.""" """ToDo: Perform train-test split on the master dataset.""" return train_features, test_features, train_labels, test_labelsTo test the function, create a new script that imports ML_toolbox.py, run the function, and then print out the return values.
The Baseline Model
Let us start by building a simple neural network model with one hidden layer. This will serve as a baseline model, which we will attempt to improve through the tuning process below:
def NN_Model_1H(hidden_neurons, learning_rate):
"""Definition of deep learning model with one dense hidden layer"""
model = Sequential([
# More hidden layers can be added here
Dense(hidden_neurons, activation='relu', input_shape=(19,),
kernel_initializer='random_normal'), # Hidden Layer
Dense(18, activation='softmax',
kernel_initializer='random_normal') # Output Layer
])
adam_opt = Adam(lr=learning_rate, beta_1=0.9, beta_2=0.999, amsgrad=False)
model.compile(optimizer=adam_opt,
loss='categorical_crossentropy',
metrics=['accuracy'])
return model
Reasoning for the Baseline Model
Why do we use a model with one hidden layer as a baseline, instead of the model with no hidden layer? Discuss this with your peer.
Solutions
We usually want to start with a fairly reasonable model as the baseline for tuning. The no-hidden-layer model has no hidden neurons by definition, so it lacks an important hyperparameter. Therefore the model’s usefulness as a baseline will be limited. We therefore use the one-hidden-layer model as our baseline.
More specifically, the baseline neural network model will have 18 neurons in the hidden layer. It will be trained with Adam optimizer with learning rate of 0.0003, batch size of 32, and epoch of 10. Let us construct and train this model:
model_1H = NN_Model_1H(18,0.0003)
model_1H_history = model_1H.fit(train_features,
train_L_onehot,
epochs=10, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
Epoch 1/10
6827/6827 - 10s - loss: 1.1037 - accuracy: 0.6752 - val_loss: 0.5488 - val_accuracy: 0.8702
Epoch 2/10
6827/6827 - 9s - loss: 0.4071 - accuracy: 0.9047 - val_loss: 0.3205 - val_accuracy: 0.9245
Epoch 3/10
6827/6827 - 9s - loss: 0.2743 - accuracy: 0.9319 - val_loss: 0.2425 - val_accuracy: 0.9385
Epoch 4/10
6827/6827 - 9s - loss: 0.2177 - accuracy: 0.9468 - val_loss: 0.1990 - val_accuracy: 0.9509
Epoch 5/10
6827/6827 - 9s - loss: 0.1818 - accuracy: 0.9592 - val_loss: 0.1692 - val_accuracy: 0.9628
Epoch 6/10
6827/6827 - 7s - loss: 0.1561 - accuracy: 0.9664 - val_loss: 0.1470 - val_accuracy: 0.9671
Epoch 7/10
6827/6827 - 9s - loss: 0.1363 - accuracy: 0.9703 - val_loss: 0.1296 - val_accuracy: 0.9708
Epoch 8/10
6827/6827 - 9s - loss: 0.1209 - accuracy: 0.9740 - val_loss: 0.1171 - val_accuracy: 0.9739
Epoch 9/10
6827/6827 - 9s - loss: 0.1089 - accuracy: 0.9769 - val_loss: 0.1058 - val_accuracy: 0.9770
Epoch 10/10
6827/6827 - 7s - loss: 0.0995 - accuracy: 0.9786 - val_loss: 0.0970 - val_accuracy: 0.9792
Let us visualize the model training history by borrowing the following functions from the previous episode.
plot_loss and plot_acc functions are designed to individually
plot the training and validation loss (plot_loss) and accuracy (plot_acc).
They take the model’s training history, an optional epoch shift to align x-axis epochs,
and a flag to show the plot immediately or not.
combine_plots function combines the insights from both loss and accuracy,
this function arranges them into a single, neatly organized figure with two subplots
– one for loss, another for accuracy.
It provides granular control over figure dimensions, subplot spacing,
and whether to individually display the subplots or show them all together in the end.
More details about the above functions can be found in the comments of the code.
Plotting Functions
plot_loss
# Function to plot the training and validation loss over epochs def plot_loss(model_history, epoch_shifts= None, show=True): # If no epoch shifts are provided, default to (0,0) if epoch_shifts is None: epoch_shifts = (0, 0) # Calculate the shifted epochs for both training and validation epochs_train = np.array(model_history.epoch) + epoch_shifts[0] epochs_val = np.array(model_history.epoch) + epoch_shifts[1] # Plot training loss with circle markers plt.plot(epochs_train, model_history.history['loss'], '-o', label='Train Loss') # Plot validation loss with cross markers plt.plot(epochs_val, model_history.history['val_loss'], '-x', label='Val Loss') # Set plot title and axis labels plt.title('Model Loss', fontsize=14) plt.ylabel('Loss', fontsize=14) plt.xlabel('Epoch', fontsize=14) # Adjust x-axis limits to include all epochs plt.xlim([min(np.min(epochs_train), np.min(epochs_val)), max(np.max(epochs_train), np.max(epochs_val))]) # Position the legend in the upper right corner plt.legend(loc='upper right') # Increase font size for axis ticks plt.tick_params(axis='x', labelsize=14) plt.tick_params(axis='y', labelsize=14) # Display the plot if 'show' is True if show: plt.show() # Return the current axis object for further manipulation if needed return plt.gca()plot_acc
# Function to plot the training and validation accuracy over epochs def plot_acc(model_history, epoch_shifts=None, show=True): # Default to (0,0) if no epoch shifts are provided if epoch_shifts is None: epoch_shifts = (0, 0) # Calculate the shifted epochs for both training and validation epochs_train = np.array(model_history.epoch) + epoch_shifts[0] epochs_val = np.array(model_history.epoch) + epoch_shifts[1] # Plot training accuracy with circle markers plt.plot(epochs_train, model_history.history['accuracy'], '-o', label='Train Accuracy') # Plot validation accuracy with cross markers plt.plot(epochs_val, model_history.history['val_accuracy'], '-x', label='Val Accuracy') # Set plot title and axis labels plt.title('Model Accuracy', fontsize=14) plt.ylabel('Accuracy', fontsize=14) plt.xlabel('Epoch', fontsize=14) # Adjust x-axis limits to include all epochs plt.xlim([min(np.min(epochs_train), np.min(epochs_val)), max(np.max(epochs_train), np.max(epochs_val))]) # Position the legend in the lower right corner plt.legend(loc='lower right') # Increase font size for axis ticks plt.tick_params(axis='x', labelsize=14) plt.tick_params(axis='y', labelsize=14) # Display the plot if 'show' is True if show: plt.show() # Return the current axis object return plt.gca()combine_plots
# Function to combine the loss and accuracy plots into a single figure with two subplots def combine_plots(model_history, plot_loss_func, plot_acc_func, figsize=(10.0, 5.0), loss_epoch_shifts= None, loss_show=False, acc_epoch_shifts= None, acc_show=False, # Prevents immediate showing in subplots wspace=0.4): # Controls space between subplots # Create a new figure with the specified size plt.figure(figsize=figsize) # Subplot for loss plt.subplot(1, 2, 1) # 1 row, 2 columns, first subplot plot_loss_func(model_history, epoch_shifts=loss_epoch_shifts, show=loss_show) # Call plot_loss function # Subplot for accuracy plt.subplot(1, 2, 2) # 1 row, 2 columns, second subplot plot_acc_func(model_history, epoch_shifts=acc_epoch_shifts, show=acc_show) # Call plot_acc function # Adjust the space between subplots plt.subplots_adjust(wspace=wspace) # Finally, display the combined figure plt.show()
combine_plots(model_1H_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Before we attempt more sophisticated improvements,
it is imperative to verify if our model training has converged.
Here are several common methods for determining whether the model has converged:
1. Keep training until the change in loss (i.e., the loss value computed with the training set)
or accuracy (i.e., the proportion of correctly classified instances)
between epochs N and N+1 is less than the predetermined threshold.
2. Monitoring the convergence curve
until the curve depicting loss or accuracy typically levels off or plateaus.
This indicates that the model is no longer making significant improvements and has likely converged.
3. Set a suitable number of training epochs based on experience.
Typically, the model will converge after this number of epochs.
Discuss the Training Convergence
In the training of
model_1Habove, please observe the changes inloss,val_loss,acc, andval_accas more epochs unfold.
- What are the changes in the earliest iterations (e.g. between epochs 1 and 2) and the latter iterations (e.g. between epochs 9 and 10)?
- How different are the values (and the changes in values) between those estimated from the training set (
lossandacc) and those from the validation set (val_lossandval_acc).- Has the model converged well enough with 10 epochs?
Solutions
The changes in the loss and accuracy at the beginning and ending of the training loops are as follows:
Between epochs change in losschange in accuracychange in val_losschange in val_accuracy1 –> 2 (beginning) -0.6966 0.2295 -0.2283 0.0543 9 –> 10 (ending) -0.0094 0.0017 -0.0088 0.0022 The changes in the loss and accuracy, for both training and validation datasets are dramatic at the beginning of the iteration. By the 10th iteration, the changes somewhat leveled off: the loss still decreases by about -0.009, and the accuracy still increases by about 0.2%.
In the second re-run of
fit(), the loss function has crossed over between the training and validation data. The accuracy of the train and test data are still tracking each other but with greater and greater apparent discrepancy; but we have to realize the changes in the accuracy between successive epochs are getting smaller and smaller.
Has this model converged? This is difficult to answer a priori (i.e. without prior knowledge). To determine whether our training has achieved good convergence, we should also consider this complementary question: What do you think is the limit of the accuracy of this model, before any tuning? Is this model capable only of 98% accuracy (which was achieved already by 10 epochs)? Can we reach 99%? How about 99.9%? Remember that in cybersecurity, we will really want to achieve as high an accuracy as possible to minimize wrong predictions. The best way to judge the convergence of the model is to run a few more training iterations, each time continuing from the previously trained model.
Checking Model Convergence: Train with More Epochs!
In order to continue the training on a model (model_1H in this case),
we simply call the fit function again on the model that has been previously trained.
You can decide the number of additional epochs to try.
For the second iteration below, we will train for 15 more epochs:
model_1H_history_p2 = model_1H.fit(train_features,
train_L_onehot,
epochs=15, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
Epoch 1/15
6827/6827 - 9s - loss: 0.0921 - accuracy: 0.9799 - val_loss: 0.0906 - val_accuracy: 0.9806
Epoch 2/15
6827/6827 - 9s - loss: 0.0860 - accuracy: 0.9811 - val_loss: 0.0854 - val_accuracy: 0.9821
Epoch 3/15
6827/6827 - 9s - loss: 0.0807 - accuracy: 0.9823 - val_loss: 0.0808 - val_accuracy: 0.9835
Epoch 4/15
6827/6827 - 9s - loss: 0.0761 - accuracy: 0.9840 - val_loss: 0.0760 - val_accuracy: 0.9838
Epoch 5/15
6827/6827 - 9s - loss: 0.0721 - accuracy: 0.9854 - val_loss: 0.0726 - val_accuracy: 0.9850
Epoch 6/15
6827/6827 - 9s - loss: 0.0688 - accuracy: 0.9866 - val_loss: 0.0694 - val_accuracy: 0.9849
Epoch 7/15
6827/6827 - 9s - loss: 0.0659 - accuracy: 0.9874 - val_loss: 0.0666 - val_accuracy: 0.9873
Epoch 8/15
6827/6827 - 9s - loss: 0.0633 - accuracy: 0.9880 - val_loss: 0.0650 - val_accuracy: 0.9867
Epoch 9/15
6827/6827 - 9s - loss: 0.0609 - accuracy: 0.9884 - val_loss: 0.0622 - val_accuracy: 0.9881
Epoch 10/15
6827/6827 - 9s - loss: 0.0588 - accuracy: 0.9887 - val_loss: 0.0597 - val_accuracy: 0.9886
Epoch 11/15
6827/6827 - 9s - loss: 0.0569 - accuracy: 0.9891 - val_loss: 0.0579 - val_accuracy: 0.9888
Epoch 12/15
6827/6827 - 9s - loss: 0.0551 - accuracy: 0.9891 - val_loss: 0.0563 - val_accuracy: 0.9890
Epoch 13/15
6827/6827 - 9s - loss: 0.0535 - accuracy: 0.9894 - val_loss: 0.0552 - val_accuracy: 0.9883
Epoch 14/15
6827/6827 - 9s - loss: 0.0519 - accuracy: 0.9895 - val_loss: 0.0539 - val_accuracy: 0.9888
Epoch 15/15
6827/6827 - 9s - loss: 0.0506 - accuracy: 0.9897 - val_loss: 0.0525 - val_accuracy: 0.9896
Since we are not tuning yet,
we must not change the values of the hyperparameters other than epochs.
The history from the second round of training is stored in model_1H_history_p2 object
(where p2 stands for “part 2”),
which we will need for plotting and analysis.
Reviewing the Second Training Round
Let us discuss the outcome of the second round of the training by answering the following questions:
At the end of the second call to the
fit()function, how many total epochs has this model been trained with?Compare the loss and accuracy of the model at the end of the first and second rounds of training. Additionally, what are the changes in the loss and accuracy at the end of the second round?
Estimate what would happen if we further train with more epochs?
Solutions
In our case above, after the second round of training, we have trained the model for a total of (10+15) = 25 epochs.
At the end of the first round of training, we got an accuracy of nearly 98%, which still increased by about 0.2% between epoch 9 and 10. After the second round, the accuracy increased to almost 99% (a 1 percent improvement, which is not negligible!), and it was still increasing by less than 0.1%. Compare the following two outputs: ~~~ # the end of first fit() training: Epoch 10/10 6827/6827 - 12s - loss: 0.0996 - accuracy: 0.9785 - val_loss: 0.0970 - val_accuracy: 0.9792
the end of second fit() training:
Epoch 15/15 6827/6827 - 13s - loss: 0.0507 - accuracy: 0.9897 - val_loss: 0.0524 - val_accuracy: 0.9896 ~~~
With further training, the accuracy can continue to improve, but at slower and slower rates.
Plot the Progress of the Second Training Round
As a simple exercise, plot the progression of the loss function and accuracy in the second training round (hint: use the values in
model_1H_history_p2).Solutions
combine_plots(model_1H_history_p2, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)
For 3rd and 4th Rounds
Hint: You can run more training iterations as you see fit! In other words, the
model_0.fitcan be called many times; every time, it starts with the previously optimized model and further refines the parameters.The 3rd Round
model_1H_history_p3 = model_1H.fit(train_features, train_L_onehot, epochs=25, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2)Epoch 1/25 6827/6827 - 9s - loss: 0.0492 - accuracy: 0.9899 - val_loss: 0.0510 - val_accuracy: 0.9898 Epoch 2/25 6827/6827 - 9s - loss: 0.0480 - accuracy: 0.9902 - val_loss: 0.0506 - val_accuracy: 0.9897 Epoch 3/25 6827/6827 - 9s - loss: 0.0467 - accuracy: 0.9904 - val_loss: 0.0493 - val_accuracy: 0.9896 Epoch 4/25 6827/6827 - 9s - loss: 0.0456 - accuracy: 0.9905 - val_loss: 0.0478 - val_accuracy: 0.9903 Epoch 5/25 6827/6827 - 9s - loss: 0.0446 - accuracy: 0.9906 - val_loss: 0.0470 - val_accuracy: 0.9905 Epoch 6/25 6827/6827 - 9s - loss: 0.0436 - accuracy: 0.9907 - val_loss: 0.0460 - val_accuracy: 0.9906 Epoch 7/25 6827/6827 - 9s - loss: 0.0427 - accuracy: 0.9908 - val_loss: 0.0455 - val_accuracy: 0.9905 Epoch 8/25 6827/6827 - 9s - loss: 0.0419 - accuracy: 0.9908 - val_loss: 0.0449 - val_accuracy: 0.9900 Epoch 9/25 6827/6827 - 9s - loss: 0.0412 - accuracy: 0.9909 - val_loss: 0.0441 - val_accuracy: 0.9906 Epoch 10/25 6827/6827 - 9s - loss: 0.0404 - accuracy: 0.9910 - val_loss: 0.0428 - val_accuracy: 0.9904 Epoch 11/25 6827/6827 - 9s - loss: 0.0396 - accuracy: 0.9911 - val_loss: 0.0423 - val_accuracy: 0.9908 Epoch 12/25 6827/6827 - 9s - loss: 0.0389 - accuracy: 0.9912 - val_loss: 0.0417 - val_accuracy: 0.9912 Epoch 13/25 6827/6827 - 9s - loss: 0.0383 - accuracy: 0.9913 - val_loss: 0.0412 - val_accuracy: 0.9907 Epoch 14/25 6827/6827 - 9s - loss: 0.0375 - accuracy: 0.9913 - val_loss: 0.0408 - val_accuracy: 0.9907 Epoch 15/25 6827/6827 - 9s - loss: 0.0370 - accuracy: 0.9915 - val_loss: 0.0398 - val_accuracy: 0.9913 Epoch 16/25 6827/6827 - 9s - loss: 0.0361 - accuracy: 0.9918 - val_loss: 0.0391 - val_accuracy: 0.9926 Epoch 17/25 6827/6827 - 9s - loss: 0.0355 - accuracy: 0.9920 - val_loss: 0.0384 - val_accuracy: 0.9917 Epoch 18/25 6827/6827 - 9s - loss: 0.0347 - accuracy: 0.9923 - val_loss: 0.0382 - val_accuracy: 0.9920 Epoch 19/25 6827/6827 - 9s - loss: 0.0340 - accuracy: 0.9925 - val_loss: 0.0372 - val_accuracy: 0.9920 Epoch 20/25 6827/6827 - 9s - loss: 0.0333 - accuracy: 0.9925 - val_loss: 0.0367 - val_accuracy: 0.9921 Epoch 21/25 6827/6827 - 9s - loss: 0.0327 - accuracy: 0.9928 - val_loss: 0.0360 - val_accuracy: 0.9928 Epoch 22/25 6827/6827 - 9s - loss: 0.0320 - accuracy: 0.9931 - val_loss: 0.0354 - val_accuracy: 0.9925 Epoch 23/25 6827/6827 - 9s - loss: 0.0313 - accuracy: 0.9932 - val_loss: 0.0350 - val_accuracy: 0.9930 Epoch 24/25 6827/6827 - 9s - loss: 0.0306 - accuracy: 0.9935 - val_loss: 0.0336 - val_accuracy: 0.9933 Epoch 25/25 6827/6827 - 9s - loss: 0.0299 - accuracy: 0.9936 - val_loss: 0.0340 - val_accuracy: 0.9941combine_plots(model_1H_history_p3, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)
The 4th Round
model_1H_history_p4 = model_1H.fit(train_features, train_L_onehot, epochs=25, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2)Epoch 1/25 6827/6827 - 9s - loss: 0.0294 - accuracy: 0.9937 - val_loss: 0.0326 - val_accuracy: 0.9935 Epoch 2/25 6827/6827 - 9s - loss: 0.0288 - accuracy: 0.9939 - val_loss: 0.0330 - val_accuracy: 0.9930 Epoch 3/25 6827/6827 - 9s - loss: 0.0283 - accuracy: 0.9940 - val_loss: 0.0328 - val_accuracy: 0.9936 Epoch 4/25 6827/6827 - 9s - loss: 0.0278 - accuracy: 0.9942 - val_loss: 0.0314 - val_accuracy: 0.9938 Epoch 5/25 6827/6827 - 9s - loss: 0.0273 - accuracy: 0.9943 - val_loss: 0.0311 - val_accuracy: 0.9939 Epoch 6/25 6827/6827 - 9s - loss: 0.0268 - accuracy: 0.9944 - val_loss: 0.0306 - val_accuracy: 0.9939 Epoch 7/25 6827/6827 - 9s - loss: 0.0264 - accuracy: 0.9944 - val_loss: 0.0304 - val_accuracy: 0.9944 Epoch 8/25 6827/6827 - 9s - loss: 0.0260 - accuracy: 0.9945 - val_loss: 0.0297 - val_accuracy: 0.9943 Epoch 9/25 6827/6827 - 9s - loss: 0.0256 - accuracy: 0.9946 - val_loss: 0.0300 - val_accuracy: 0.9940 Epoch 10/25 6827/6827 - 9s - loss: 0.0253 - accuracy: 0.9946 - val_loss: 0.0291 - val_accuracy: 0.9950 Epoch 11/25 6827/6827 - 9s - loss: 0.0249 - accuracy: 0.9946 - val_loss: 0.0283 - val_accuracy: 0.9952 Epoch 12/25 6827/6827 - 9s - loss: 0.0245 - accuracy: 0.9947 - val_loss: 0.0282 - val_accuracy: 0.9945 Epoch 13/25 6827/6827 - 9s - loss: 0.0244 - accuracy: 0.9948 - val_loss: 0.0282 - val_accuracy: 0.9942 Epoch 14/25 6827/6827 - 9s - loss: 0.0239 - accuracy: 0.9948 - val_loss: 0.0280 - val_accuracy: 0.9940 Epoch 15/25 6827/6827 - 9s - loss: 0.0235 - accuracy: 0.9949 - val_loss: 0.0276 - val_accuracy: 0.9945 Epoch 16/25 6827/6827 - 9s - loss: 0.0234 - accuracy: 0.9949 - val_loss: 0.0270 - val_accuracy: 0.9953 Epoch 17/25 6827/6827 - 9s - loss: 0.0230 - accuracy: 0.9950 - val_loss: 0.0285 - val_accuracy: 0.9945 Epoch 18/25 6827/6827 - 9s - loss: 0.0227 - accuracy: 0.9951 - val_loss: 0.0269 - val_accuracy: 0.9948 Epoch 19/25 6827/6827 - 9s - loss: 0.0226 - accuracy: 0.9951 - val_loss: 0.0270 - val_accuracy: 0.9946 Epoch 20/25 6827/6827 - 9s - loss: 0.0222 - accuracy: 0.9953 - val_loss: 0.0269 - val_accuracy: 0.9949 Epoch 21/25 6827/6827 - 9s - loss: 0.0220 - accuracy: 0.9952 - val_loss: 0.0261 - val_accuracy: 0.9949 Epoch 22/25 6827/6827 - 9s - loss: 0.0216 - accuracy: 0.9953 - val_loss: 0.0258 - val_accuracy: 0.9949 Epoch 23/25 6827/6827 - 9s - loss: 0.0215 - accuracy: 0.9954 - val_loss: 0.0261 - val_accuracy: 0.9952 Epoch 24/25 6827/6827 - 9s - loss: 0.0215 - accuracy: 0.9953 - val_loss: 0.0255 - val_accuracy: 0.9948 Epoch 25/25 6827/6827 - 9s - loss: 0.0210 - accuracy: 0.9954 - val_loss: 0.0250 - val_accuracy: 0.9956combine_plots(model_1H_history_p4, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)
Consecutive Training Sessions
In above content, we’re examining the training progress of a model across multiple epochs. We’ve conducted three consecutive training sessions, each with additional epochs added, to observe how the model’s performance evolves over time. To visualize this progression more intuitively, we’ll plot the training loss and accuracy of each model side by side.
Three-subplot
Both plot_loss_subpanel and plot_accuracy_subpanel are designed to visualize the loss and accuracy of multiple models during training. Each function receives a list of model histories as input, which usually contains performance indicators of different models during training. The function creates a subgraph for each model and displays them side by side in the same chart to facilitate comparison of the performance of different models. More details can be found in the comments in the code.
def plot_loss_subpanel(model_histories): # Calculate epochs counts and determine width ratios for subplots epochs_counts = [len(history.history['loss']) for history in model_histories] total_epochs = sum(epochs_counts) width_ratios = [epochs / total_epochs for epochs in epochs_counts] # Initialize figure and grid layout fig = plt.figure(figsize=(20, 6)) gs = gridspec.GridSpec(1, len(model_histories), width_ratios=width_ratios) # Initialize y-axis limits y_min, y_max = float('inf'), float('-inf') start_epoch = 0 # Start epoch counter for x-axis labeling # Loop through each model history for i, model_history in enumerate(model_histories): ax = fig.add_subplot(gs[i]) # Create subplot loss = model_history.history['loss'] # Training loss val_loss = model_history.history['val_loss'] # Validation loss epochs = range(start_epoch + 1, start_epoch + len(loss) + 1) # Epochs range # Plot data with custom markers ax.plot(epochs, loss, '-o', label='Train Loss') ax.plot(epochs, val_loss, '-x', label='Val Loss') ax.legend(loc='upper right') # Position legend # Update y-axis limit boundaries y_min = min(y_min, min(loss), min(val_loss)) y_max = max(y_max, max(loss), max(val_loss)) # Increment start_epoch for the next model's plot start_epoch += len(loss) # Apply uniform y-limits and adjust tick font sizes for all axes for ax in fig.get_axes(): ax.set_ylim([y_min, y_max]) ax.tick_params(axis='x', labelsize=14) ax.tick_params(axis='y', labelsize=14) # Hide y-axis labels and ticks for all but the first subplot for ax in fig.get_axes()[1:]: ax.set_yticklabels([]) ax.set_yticks([]) # Common x and y axis labels fig.text(0.5, 0.04, 'Epoch', ha='center', fontsize=16) fig.text(0.04, 0.5, 'Loss', va='center', rotation='vertical', fontsize=16) # Main title fig.suptitle('Model Loss', fontsize=20) # Adjust layout to fit well plt.tight_layout(rect=[0.05, 0.05, 0.95, 0.95]) plt.show() # Display the plotdef plot_accuracy_subpanel(model_histories): # Similar process as plot_loss_subpanel, adjusted for accuracy data epochs_counts = [len(history.history['accuracy']) for history in model_histories] total_epochs = sum(epochs_counts) width_ratios = [epochs / total_epochs for epochs in epochs_counts] fig = plt.figure(figsize=(20, 6)) gs = gridspec.GridSpec(1, len(model_histories), width_ratios=width_ratios) y_min, y_max = float('inf'), float('-inf') start_epoch = 0 for i, model_history in enumerate(model_histories): ax = fig.add_subplot(gs[i]) accuracy = model_history.history['accuracy'] val_accuracy = model_history.history['val_accuracy'] epochs = range(start_epoch + 1, start_epoch + len(accuracy) + 1) ax.plot(epochs, accuracy, '-o', label='Train Accuracy') ax.plot(epochs, val_accuracy, '-x', label='Val Accuracy') ax.legend(loc='lower right') # Legend at the bottom right y_min = min(y_min, min(accuracy), min(val_accuracy)) y_max = max(y_max, max(accuracy), max(val_accuracy)) start_epoch += len(accuracy) for ax in fig.get_axes(): ax.set_ylim([y_min, y_max]) ax.tick_params(axis='x', labelsize=14) ax.tick_params(axis='y', labelsize=14) for ax in fig.get_axes()[1:]: ax.set_yticklabels([]) ax.set_yticks([]) fig.text(0.5, 0.04, 'Epoch', ha='center', fontsize=16) fig.text(0.04, 0.5, 'Accuracy', va='center', rotation='vertical', fontsize=16) fig.suptitle('Model Accuracy', fontsize=20) plt.tight_layout(rect=[0.05, 0.05, 0.95, 0.95]) plt.show()plot_loss_subpanel([model_1H_history_p2, model_1H_history_p3, model_1H_history_p4]) plot_accuracy_subpanel([ model_1H_history_p2, model_1H_history_p3, model_1H_history_p4])
QUESTION:
What are other adjustable hyperparameters in this model?
Solutions
hidden_neurons(the number of neurons in the hidden layer),epochandbatch_sizeare three important hyperparameters. Activation function can also be considered a hyperparameter that affects the architecture of the model.
Model Tuning Experiments
Now that we have built and trained the baseline neural network model, we will run a variety of experiments using different combinations of hyperparameters, in order to find the best performing model. Below is a list of hyperparameters that could be interesting to explore; feel free to experiment with your own ideas as well.
We will use the NN_Model_1H with 18 neurons in the hidden layer as a baseline.
Starting from this model, let us:
- Test with different numbers of neurons in the hidden layer: 12, 8, 4, 2, 1
- It is also worthwhile to test a higher number of neurons: 40, 80, or more
- Test with different learning rates: 0.0003, 0.001, 0.01, 0.1
- Test with different batch sizes: 16, 32, 64, 128, 512, 1024
- Test with different numbers of hidden layers: 2, 3, and so on
NOTE: The easiest way to do this exploration is to simply copy the code cell where we constructed and trained the baseline model and paste it to a new cell below, since most of the parameters (
hidden_neurons,learning_rate,batch_size, etc.) can be changed when calling theNN_Model_1Hfunction or when fitting the model. However, to change the number of hidden layers (which we will do much later), the originalNN_model_1Hfunction must be duplicated and modified.
NOTE: As part of the post-processing phase, the user must include metadata information about the model. The type of metadata collected depends on what is important to compare in the post-analysis phase. For these experiments, we will track how increasing or decreasing one hyperparameter affects the model’s accuracy. So, the metadata to include is the model type (i.e. model code and type of experiment), a job number (unique to that model), the number of neurons (which we will save as a list, where each value represents the number of neurons in that layer), the learning rate, batch size, and number of epochs.
Rerun the model_1H model (the definition and fitting of the model) and add the following metadata.
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H_data = ('1H18N-neuron', 0, '[18]', 0.0003, 32, 10)
Tuning Experiments, Part 1: Varying Number of Neurons in Hidden Layers
In this round of experiments, we create several variants of NN_Model_1H models
with varying the hidden_neurons hyperparameter,
i.e. the number of neurons in the hidden layer.
Increasing the number of neurons increases the complexity of the model.
Decreasing the number of neurons decreases the complexity of the model.
The number of neurons can be thought of as the “width” of the hidden layer.
The loss and accuracy of each model will be assessed as a function of hidden_neurons.
All the other hyperparameters (e.g. learning rate, epochs, batch_size, number of hidden layers)
will be kept constant; they will be varied later.
Not every number of hidden neurons is tested,
so feel free to create new code cells with a different number of neurons as your curiousity leads you.
Going in FEWER hidden neurons
Model “1H12N”: 12 neurons in the hidden layer
#RUNIT
# the model with 12 neurons in the hidden layer
model_1H12N = NN_Model_1H(12,0.0003)
model_1H12N_history = model_1H12N.fit(train_features,
train_L_onehot,
epochs=10, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H12N_data = ('1H12N-neuron', 1, '[12]', 0.0003, 32, 10)
combine_plots(model_1H12N_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Epoch 1/10
6827/6827 - 8s - loss: 1.1864 - accuracy: 0.6581 - val_loss: 0.6118 - val_accuracy: 0.8622
Epoch 2/10
6827/6827 - 9s - loss: 0.4592 - accuracy: 0.8992 - val_loss: 0.3700 - val_accuracy: 0.9217
Epoch 3/10
6827/6827 - 7s - loss: 0.3286 - accuracy: 0.9277 - val_loss: 0.2997 - val_accuracy: 0.9331
Epoch 4/10
6827/6827 - 7s - loss: 0.2803 - accuracy: 0.9349 - val_loss: 0.2659 - val_accuracy: 0.9381
Epoch 5/10
6827/6827 - 7s - loss: 0.2531 - accuracy: 0.9381 - val_loss: 0.2437 - val_accuracy: 0.9407
Epoch 6/10
6827/6827 - 9s - loss: 0.2328 - accuracy: 0.9413 - val_loss: 0.2253 - val_accuracy: 0.9448
Epoch 7/10
6827/6827 - 7s - loss: 0.2161 - accuracy: 0.9455 - val_loss: 0.2105 - val_accuracy: 0.9507
Epoch 8/10
6827/6827 - 7s - loss: 0.2026 - accuracy: 0.9496 - val_loss: 0.1983 - val_accuracy: 0.9549
Epoch 9/10
6827/6827 - 7s - loss: 0.1908 - accuracy: 0.9540 - val_loss: 0.1871 - val_accuracy: 0.9556
Epoch 10/10
6827/6827 - 9s - loss: 0.1777 - accuracy: 0.9565 - val_loss: 0.1731 - val_accuracy: 0.9593
Model “1H8N”: 8 neurons in the hidden layer
#RUNIT
model_1H8N = NN_Model_1H(8,0.0003)
model_1H8N_history = model_1H8N.fit(train_features,
train_L_onehot,
epochs=10, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H8N_data = ('1H8N-neuron', 2, '[8]', 0.0003, 32, 10)
combine_plots(model_1H8N_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Epoch 1/10
6827/6827 - 8s - loss: 1.4420 - accuracy: 0.5361 - val_loss: 0.9016 - val_accuracy: 0.7646
Epoch 2/10
6827/6827 - 7s - loss: 0.6984 - accuracy: 0.8269 - val_loss: 0.5523 - val_accuracy: 0.8674
Epoch 3/10
6827/6827 - 8s - loss: 0.4725 - accuracy: 0.8843 - val_loss: 0.4205 - val_accuracy: 0.8979
Epoch 4/10
6827/6827 - 7s - loss: 0.3848 - accuracy: 0.9112 - val_loss: 0.3640 - val_accuracy: 0.9167
Epoch 5/10
6827/6827 - 7s - loss: 0.3445 - accuracy: 0.9195 - val_loss: 0.3347 - val_accuracy: 0.9224
Epoch 6/10
6827/6827 - 7s - loss: 0.3217 - accuracy: 0.9235 - val_loss: 0.3158 - val_accuracy: 0.9258
Epoch 7/10
6827/6827 - 8s - loss: 0.3057 - accuracy: 0.9269 - val_loss: 0.3015 - val_accuracy: 0.9272
Epoch 8/10
6827/6827 - 7s - loss: 0.2935 - accuracy: 0.9302 - val_loss: 0.2909 - val_accuracy: 0.9323
Epoch 9/10
6827/6827 - 7s - loss: 0.2833 - accuracy: 0.9319 - val_loss: 0.2822 - val_accuracy: 0.9339
Epoch 10/10
6827/6827 - 7s - loss: 0.2747 - accuracy: 0.9341 - val_loss: 0.2734 - val_accuracy: 0.9362
Tips & Tricks for Experimental Runs
Do you see the systematic names of the model and history variables, etc.?
The variable called model_1H12N means “a model with one hidden layer (1H)
that has 12 neurons (12N)”.
The use of systematic names, albeit complicated,
will be very helpful in keeping track of different experiments.
For example, down below, we will have models with two hidden layers;
such a model can be denoted by a variable name such as model_2H18N12N, etc.
DISCUSSION QUESTIONS:
Why don’t we just name the variables model1, model2, model3, …?
What are the advantages and disadvantages of naming them with this schema?
Keeping track of experimental results:
At this stage, it may be helpful to keep track the final training accuracy (after 10 epochs)
for each model with a distinct hidden_neurons value.
You can use pen-and-paper, or build a spreadsheet with the following
values:
hidden_neurons |
val_accuracy |
|---|---|
| 1 | …. |
| … | …. |
| 18 | 0.9792 (example) |
| … | …. |
| 80 | …. |
Exercises
Create additional code cells to run models with 4, 2, 1 neurons in the hidden layer
Model “1H4N”: 4 neurons in the hidden layer
#RUNIT model_1H4N = NN_Model_1H(4,0.0003) model_1H4N_history = model_1H4N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H4N_data = ('1H4N-neuron', 3, '[4]', 0.0003, 32, 10) combine_plots(model_1H4N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 8s - loss: 1.6787 - accuracy: 0.4199 - val_loss: 1.2247 - val_accuracy: 0.5768 Epoch 2/10 6827/6827 - 7s - loss: 1.0693 - accuracy: 0.6315 - val_loss: 0.9432 - val_accuracy: 0.6934 Epoch 3/10 6827/6827 - 8s - loss: 0.8440 - accuracy: 0.7524 - val_loss: 0.7699 - val_accuracy: 0.7884 Epoch 4/10 6827/6827 - 8s - loss: 0.7248 - accuracy: 0.7993 - val_loss: 0.6817 - val_accuracy: 0.8122 Epoch 5/10 6827/6827 - 8s - loss: 0.6571 - accuracy: 0.8325 - val_loss: 0.6291 - val_accuracy: 0.8449 Epoch 6/10 6827/6827 - 8s - loss: 0.6146 - accuracy: 0.8495 - val_loss: 0.5927 - val_accuracy: 0.8491 Epoch 7/10 6827/6827 - 8s - loss: 0.5846 - accuracy: 0.8541 - val_loss: 0.5679 - val_accuracy: 0.8601 Epoch 8/10 6827/6827 - 8s - loss: 0.5640 - accuracy: 0.8572 - val_loss: 0.5498 - val_accuracy: 0.8783 Epoch 9/10 6827/6827 - 8s - loss: 0.5483 - accuracy: 0.8659 - val_loss: 0.5352 - val_accuracy: 0.8762 Epoch 10/10 6827/6827 - 8s - loss: 0.5347 - accuracy: 0.8701 - val_loss: 0.5208 - val_accuracy: 0.8687
Model “1H2N”: 2 neurons in the hidden layer
#RUNIT model_1H2N = NN_Model_1H(2,0.0003) model_1H2N_history = model_1H2N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H2N_data = ('1H2N-neuron', 4, '[2]', 0.0003, 32, 10) combine_plots(model_1H2N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 9s - loss: 2.1385 - accuracy: 0.2973 - val_loss: 1.8072 - val_accuracy: 0.3491 Epoch 2/10 6827/6827 - 7s - loss: 1.6945 - accuracy: 0.3901 - val_loss: 1.6147 - val_accuracy: 0.4122 Epoch 3/10 6827/6827 - 7s - loss: 1.5603 - accuracy: 0.4286 - val_loss: 1.5186 - val_accuracy: 0.4345 Epoch 4/10 6827/6827 - 7s - loss: 1.4834 - accuracy: 0.4416 - val_loss: 1.4552 - val_accuracy: 0.4462 Epoch 5/10 6827/6827 - 7s - loss: 1.4283 - accuracy: 0.4535 - val_loss: 1.4069 - val_accuracy: 0.4610 Epoch 6/10 6827/6827 - 7s - loss: 1.3843 - accuracy: 0.4677 - val_loss: 1.3668 - val_accuracy: 0.4711 Epoch 7/10 6827/6827 - 7s - loss: 1.3467 - accuracy: 0.4811 - val_loss: 1.3322 - val_accuracy: 0.4803 Epoch 8/10 6827/6827 - 7s - loss: 1.3153 - accuracy: 0.4931 - val_loss: 1.3039 - val_accuracy: 0.4937 Epoch 9/10 6827/6827 - 8s - loss: 1.2892 - accuracy: 0.5089 - val_loss: 1.2802 - val_accuracy: 0.5120 Epoch 10/10 6827/6827 - 7s - loss: 1.2678 - accuracy: 0.5205 - val_loss: 1.2608 - val_accuracy: 0.5241
Model “1H1N”: 1 neuron in the hidden layer
#RUNIT model_1H1N = NN_Model_1H(1,0.0003) model_1H1N_history = model_1H1N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H1N_data = ('1H1N-neuron', 5, '[1]', 0.0003, 32, 10) combine_plots(model_1H1N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 8s - loss: 2.3351 - accuracy: 0.2485 - val_loss: 2.1355 - val_accuracy: 0.2752 Epoch 2/10 6827/6827 - 7s - loss: 2.0610 - accuracy: 0.2724 - val_loss: 2.0034 - val_accuracy: 0.2723 Epoch 3/10 6827/6827 - 7s - loss: 1.9741 - accuracy: 0.2745 - val_loss: 1.9494 - val_accuracy: 0.2825 Epoch 4/10 6827/6827 - 7s - loss: 1.9346 - accuracy: 0.2829 - val_loss: 1.9205 - val_accuracy: 0.2857 Epoch 5/10 6827/6827 - 7s - loss: 1.9118 - accuracy: 0.2885 - val_loss: 1.9036 - val_accuracy: 0.2934 Epoch 6/10 6827/6827 - 8s - loss: 1.8976 - accuracy: 0.2937 - val_loss: 1.8930 - val_accuracy: 0.3008 Epoch 7/10 6827/6827 - 7s - loss: 1.8883 - accuracy: 0.3000 - val_loss: 1.8856 - val_accuracy: 0.3009 Epoch 8/10 6827/6827 - 7s - loss: 1.8819 - accuracy: 0.3048 - val_loss: 1.8808 - val_accuracy: 0.3149 Epoch 9/10 6827/6827 - 7s - loss: 1.8774 - accuracy: 0.3097 - val_loss: 1.8772 - val_accuracy: 0.3114 Epoch 10/10 6827/6827 - 8s - loss: 1.8737 - accuracy: 0.3112 - val_loss: 1.8742 - val_accuracy: 0.3104
Going in the direction of MORE hidden neurons
Models “1H40N” & “1H80N”: 40 & 80 neurons in the hidden layer
Exercises
Create more code cells to run models with 40 and 80 neurons in the hidden layer. You are welcome to explore even higher numbers of hidden neurons. Observe carefully what happening!
Model “1H4N”: 40 neurons in the hidden layer
#RUNIT model_1H40N = NN_Model_1H(40,0.0003) model_1H40N_history = model_1H40N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H40N_data = ('1H40N-neuron', 6, '[40]', 0.0003, 32, 10) combine_plots(model_1H40N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 9s - loss: 0.8427 - accuracy: 0.7706 - val_loss: 0.3632 - val_accuracy: 0.9180 Epoch 2/10 6827/6827 - 9s - loss: 0.2798 - accuracy: 0.9339 - val_loss: 0.2265 - val_accuracy: 0.9456 Epoch 3/10 6827/6827 - 9s - loss: 0.1958 - accuracy: 0.9533 - val_loss: 0.1706 - val_accuracy: 0.9637 Epoch 4/10 6827/6827 - 9s - loss: 0.1519 - accuracy: 0.9658 - val_loss: 0.1364 - val_accuracy: 0.9689 Epoch 5/10 6827/6827 - 9s - loss: 0.1226 - accuracy: 0.9718 - val_loss: 0.1113 - val_accuracy: 0.9733 Epoch 6/10 6827/6827 - 9s - loss: 0.1014 - accuracy: 0.9770 - val_loss: 0.0931 - val_accuracy: 0.9796 Epoch 7/10 6827/6827 - 9s - loss: 0.0864 - accuracy: 0.9805 - val_loss: 0.0810 - val_accuracy: 0.9815 Epoch 8/10 6827/6827 - 9s - loss: 0.0755 - accuracy: 0.9825 - val_loss: 0.0704 - val_accuracy: 0.9822 Epoch 9/10 6827/6827 - 9s - loss: 0.0667 - accuracy: 0.9848 - val_loss: 0.0632 - val_accuracy: 0.9874 Epoch 10/10 6827/6827 - 9s - loss: 0.0596 - accuracy: 0.9875 - val_loss: 0.0570 - val_accuracy: 0.9884
Model “1H80N”: 80 neurons in the hidden layer
#RUNIT model_1H80N = NN_Model_1H(80,0.0003) model_1H80N_history = model_1H80N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H80N_data = ('1H80N-neuron', 7, '[80]', 0.0003, 32, 10) combine_plots(model_1H80N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 9s - loss: 0.6815 - accuracy: 0.8244 - val_loss: 0.2710 - val_accuracy: 0.9327 Epoch 2/10 6827/6827 - 9s - loss: 0.2048 - accuracy: 0.9492 - val_loss: 0.1580 - val_accuracy: 0.9629 Epoch 3/10 >> 6827/6827 - 9s - loss: 0.1291 - accuracy: 0.9708 - val_loss: 0.1058 - val_accuracy: 0.9786 Epoch 4/10 6827/6827 - 9s - loss: 0.0900 - accuracy: 0.9808 - val_loss: 0.0764 - val_accuracy: 0.9829 Epoch 5/10 6827/6827 - 9s - loss: 0.0669 - accuracy: 0.9865 - val_loss: 0.0587 - val_accuracy: 0.9888 Epoch 6/10 6827/6827 - 9s - loss: 0.0525 - accuracy: 0.9902 - val_loss: 0.0463 - val_accuracy: 0.9915 Epoch 7/10 6827/6827 - 9s - loss: 0.0424 - accuracy: 0.9919 - val_loss: 0.0377 - val_accuracy: 0.9925 Epoch 8/10 6827/6827 - 9s - loss: 0.0351 - accuracy: 0.9931 - val_loss: 0.0326 - val_accuracy: 0.9933 Epoch 9/10 6827/6827 - 9s - loss: 0.0299 - accuracy: 0.9939 - val_loss: 0.0282 - val_accuracy: 0.9943 Epoch 10/10 6827/6827 - 9s - loss: 0.0258 - accuracy: 0.9945 - val_loss: 0.0244 - val_accuracy: 0.9948
Post-Processing from Tuning Experiments Part 1: Hidden Neurons
In the first experiment above, we tuned the NN_Model_1H model
by varying only the hidden_neurons hyperparameter.
Post-processing consists of the following steps.
Step 1: Discovering the results. Step 1 consists of running the models and saving the outputs as variables.
Step 2: Validating the data. Step 2 is completed by using the visualizations of the model training history.
-
Inspect if the trainings did not go as expected;
-
Visually inspect for anomalies;
-
Visually or numerically check for convergence (e.g. check the last 4-5 epochs, what the slope is like; any fluctuations?).
Step 3: Saving the results. Step 3 consists of collecting the output variables, creating a DataFrame to hold all the metadata and output information, and saving this DataFrame to a CSV file.
NOTE: The
getHistoryDataandcreateDataFramefunctions will be used in the post-processing phase for each experiment.
# For each run, initialize a DataFrame and then fill the DataFrame with the model metadata and history information.
# Then, concatenate the DataFrames into one large one.
def createDataFrame(metaData, histories):
assert len(metaData) == len(histories), "The number of elements in both histories and metaData need to match!"
dfs = []
for i in range(len(metaData)):
metaDataI = metaData[i]
# Create a DataFrame of the correct size and name the columns
df = pd.DataFrame(np.zeros((int(metaDataI[5]), 10), dtype=float), columns = ['Model_Type', 'job_ID', 'neurons', 'learning_rate', 'batch_size','epoch', "loss", "accuracy", "val_loss", "val_accuracy"])
# The first 5 entries in the metaData tuple correspond with the first 5 columns
df.iloc[:, 0:5] = metaDataI[0:5]
df.iloc[:, 5] = range(metaDataI[5]) # set the epochs column to the range of values
df.iloc[:, 6:] = histories[i].history.values() # the last four columns in the DataFrame correspond to the values saved in the history.history object
dfs.append(df)
fullDF = pd.concat(dfs)
fullDF.reset_index(drop=True, inplace=True) # reset the index so that it corresponds to the row number
return fullDF
# collect the history and metadata information
histories = [model_1H1N_history, model_1H2N_history, model_1H4N_history, model_1H8N_history, model_1H12N_history, model_1H_history, model_1H40N_history, model_1H80N_history]
metaData = [model_1H1N_data, model_1H2N_data, model_1H4N_data, model_1H8N_data, model_1H12N_data, model_1H_data, model_1H40N_data, model_1H80N_data]
df = createDataFrame(metaData, histories)
print(df)
df.to_csv("model_tuning_batch_hpc/post_processing_neurons.csv")
Model_Type job_ID neurons learning_rate batch_size epoch loss \
0 1H1N-neuron 5 [1] 0.0003 32 0 2.326566
1 1H1N-neuron 5 [1] 0.0003 32 1 2.044414
2 1H1N-neuron 5 [1] 0.0003 32 2 1.965614
3 1H1N-neuron 5 [1] 0.0003 32 3 1.919046
4 1H1N-neuron 5 [1] 0.0003 32 4 1.887637
.. ... ... ... ... ... ... ...
75 1H80N-neuron 7 [80] 0.0003 32 5 0.056568
76 1H80N-neuron 7 [80] 0.0003 32 6 0.046544
77 1H80N-neuron 7 [80] 0.0003 32 7 0.039363
78 1H80N-neuron 7 [80] 0.0003 32 8 0.033922
79 1H80N-neuron 7 [80] 0.0003 32 9 0.029589
accuracy val_loss val_accuracy
0 0.246048 2.125543 0.280687
1 0.290294 1.992768 0.286949
2 0.292153 1.938548 0.306888
3 0.309932 1.898871 0.315439
4 0.318464 1.874164 0.323715
.. ... ... ...
75 0.989220 0.051029 0.990937
76 0.991220 0.042285 0.991651
77 0.992333 0.036491 0.992713
78 0.993413 0.032245 0.993409
79 0.994081 0.028216 0.994251
A later lesson discusses the post-analysis from this and subsequent experiments in this lesson. Post-analysis begins with loading in the CSV file that contains the DataFrame of the model metadata and model outputs. Then, creating a plot showing how the model’s accuracy is affected by one hyperparameter. This visualization is then used to draw conclusions and hypotheses that can be used to find a more ideal value for the hyperparameter.
Tuning Experiments, Part 2: Varying Learning Rate
In this batch of experiment, the accuracy and loss function of each model will be compared while changing the ‘learning rate.’ For simplicity, all the other parameters (e.g. the number of neurons, epochs, batch size, and hidden layers) will be kept constant. The initial Baseline model will also be used. Not every learning rate is tested, so feel free to create new code cells with a different learning rate. Recall that learning rate determines the “step size” or amount that the model is able to change after each iteration.
Model “1H18N” With Learning Rate 0.0003
model_1H18N_LR0_0003 = NN_Model_1H(18,0.0003)
model_1H18N_LR0_0003_history = model_1H18N_LR0_0003.fit(train_features,
train_L_onehot,
epochs=10, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H18N_LR0_0003_data = ('lr0.0003-lr', 8, '[18]', 0.0003, 32, 10)
combine_plots(model_1H18N_LR0_0003_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Epoch 1/10
6827/6827 - 11s - loss: 1.1029 - accuracy: 0.6803 - val_loss: 0.5063 - val_accuracy: 0.8949
Epoch 2/10
6827/6827 - 10s - loss: 0.3616 - accuracy: 0.9233 - val_loss: 0.2791 - val_accuracy: 0.9413
Epoch 3/10
6827/6827 - 10s - loss: 0.2377 - accuracy: 0.9498 - val_loss: 0.2081 - val_accuracy: 0.9534
Epoch 4/10
6827/6827 - 10s - loss: 0.1850 - accuracy: 0.9585 - val_loss: 0.1678 - val_accuracy: 0.9620
Epoch 5/10
6827/6827 - 10s - loss: 0.1517 - accuracy: 0.9653 - val_loss: 0.1397 - val_accuracy: 0.9675
Epoch 6/10
6827/6827 - 10s - loss: 0.1287 - accuracy: 0.9705 - val_loss: 0.1209 - val_accuracy: 0.9725
Epoch 7/10
6827/6827 - 10s - loss: 0.1129 - accuracy: 0.9741 - val_loss: 0.1079 - val_accuracy: 0.9737
Epoch 8/10
6827/6827 - 10s - loss: 0.1016 - accuracy: 0.9758 - val_loss: 0.0982 - val_accuracy: 0.9770
Epoch 9/10
6827/6827 - 9s - loss: 0.0929 - accuracy: 0.9772 - val_loss: 0.0905 - val_accuracy: 0.9770
Epoch 10/10
6827/6827 - 10s - loss: 0.0859 - accuracy: 0.9787 - val_loss: 0.0847 - val_accuracy: 0.9788
Exercises
Create additional code cells to run models (
1H18N) with larger learning rates: 0.001, 0.01,0.1Model “1H18N” with Learning Rate 0.001
#RUNIT model_1H18N_LR0_001 = NN_Model_1H(18,0.001) model_1H18N_LR0_001_history = model_1H18N_LR0_001.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_LR0_001_data = ('lr0.001-lr', 9, '[18]', 0.001, 32, 10) combine_plots(model_1H18N_LR0_001_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 10s - loss: 0.5687 - accuracy: 0.8485 - val_loss: 0.2241 - val_accuracy: 0.9488 Epoch 2/10 6827/6827 - 10s - loss: 0.1676 - accuracy: 0.9622 - val_loss: 0.1305 - val_accuracy: 0.9677 Epoch 3/10 6827/6827 - 10s - loss: 0.1106 - accuracy: 0.9740 - val_loss: 0.0954 - val_accuracy: 0.9750 Epoch 4/10 6827/6827 - 10s - loss: 0.0856 - accuracy: 0.9785 - val_loss: 0.0769 - val_accuracy: 0.9804 Epoch 5/10 6827/6827 - 10s - loss: 0.0712 - accuracy: 0.9827 - val_loss: 0.0656 - val_accuracy: 0.9829 Epoch 6/10 6827/6827 - 10s - loss: 0.0606 - accuracy: 0.9862 - val_loss: 0.0547 - val_accuracy: 0.9886 Epoch 7/10 6827/6827 - 10s - loss: 0.0522 - accuracy: 0.9884 - val_loss: 0.0505 - val_accuracy: 0.9893 Epoch 8/10 6827/6827 - 10s - loss: 0.0464 - accuracy: 0.9896 - val_loss: 0.0446 - val_accuracy: 0.9889 Epoch 9/10 6827/6827 - 10s - loss: 0.0416 - accuracy: 0.9904 - val_loss: 0.0393 - val_accuracy: 0.9909 Epoch 10/10 6827/6827 - 10s - loss: 0.0374 - accuracy: 0.9913 - val_loss: 0.0359 - val_accuracy: 0.9921
Model “1H18N” with Learning Rate 0.01
#RUNIT model_1H18N_LR0_01 = NN_Model_1H(18,0.01) model_1H18N_LR0_01_history = model_1H18N_LR0_01.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_LR0_01_data = ('lr0.01-lr', 10, '[18]', 0.01, 32, 10) combine_plots(model_1H18N_LR0_01_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 10s - loss: 0.1858 - accuracy: 0.9505 - val_loss: 0.0807 - val_accuracy: 0.9772 Epoch 2/10 6827/6827 - 10s - loss: 0.0651 - accuracy: 0.9843 - val_loss: 0.0597 - val_accuracy: 0.9881 Epoch 3/10 6827/6827 - 10s - loss: 0.0494 - accuracy: 0.9882 - val_loss: 0.0434 - val_accuracy: 0.9884 Epoch 4/10 6827/6827 - 10s - loss: 0.0455 - accuracy: 0.9899 - val_loss: 0.0414 - val_accuracy: 0.9922 Epoch 5/10 6827/6827 - 10s - loss: 0.0426 - accuracy: 0.9905 - val_loss: 0.0357 - val_accuracy: 0.9927 Epoch 6/10 6827/6827 - 10s - loss: 0.0403 - accuracy: 0.9916 - val_loss: 0.0347 - val_accuracy: 0.9930 Epoch 7/10 6827/6827 - 10s - loss: 0.0322 - accuracy: 0.9925 - val_loss: 0.0406 - val_accuracy: 0.9902 Epoch 8/10 6827/6827 - 10s - loss: 0.0309 - accuracy: 0.9929 - val_loss: 0.0657 - val_accuracy: 0.9943 Epoch 9/10 6827/6827 - 13s - loss: 0.0301 - accuracy: 0.9936 - val_loss: 0.0326 - val_accuracy: 0.9960 Epoch 10/10 6827/6827 - 11s - loss: 0.0293 - accuracy: 0.9936 - val_loss: 0.0297 - val_accuracy: 0.9943
Model “1H18N” with Learning Rate 0.1
#RUNIT model_1H18N_LR0_1 = NN_Model_1H(18,0.1) model_1H18N_LR0_1_history = model_1H18N_LR0_1.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_LR0_1_data = ('lr0.1-lr', 11, '[18]', 0.1, 32, 10) combine_plots(model_1H18N_LR0_1_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 10s - loss: 0.5033 - accuracy: 0.9238 - val_loss: 0.1934 - val_accuracy: 0.9453 Epoch 2/10 6827/6827 - 10s - loss: 0.3213 - accuracy: 0.9370 - val_loss: 0.4727 - val_accuracy: 0.9529 Epoch 3/10 6827/6827 - 10s - loss: 0.3065 - accuracy: 0.9402 - val_loss: 0.2525 - val_accuracy: 0.9428 Epoch 4/10 6827/6827 - 10s - loss: 0.3861 - accuracy: 0.9368 - val_loss: 0.3846 - val_accuracy: 0.9441 Epoch 5/10 6827/6827 - 10s - loss: 0.3262 - accuracy: 0.9367 - val_loss: 0.3117 - val_accuracy: 0.9498 Epoch 6/10 6827/6827 - 10s - loss: 0.4499 - accuracy: 0.9347 - val_loss: 0.3124 - val_accuracy: 0.9387 Epoch 7/10 6827/6827 - 10s - loss: 0.3448 - accuracy: 0.9374 - val_loss: 0.3204 - val_accuracy: 0.9432 Epoch 8/10 6827/6827 - 10s - loss: 0.3968 - accuracy: 0.9297 - val_loss: 0.2562 - val_accuracy: 0.9388 Epoch 9/10 6827/6827 - 10s - loss: 0.2790 - accuracy: 0.9315 - val_loss: 0.2671 - val_accuracy: 0.9276 Epoch 10/10 6827/6827 - 10s - loss: 0.3960 - accuracy: 0.9269 - val_loss: 0.2751 - val_accuracy: 0.9306
Post-Processing, Part 2: Varying Learning Rate
This is implemented in the same manner as earlier.
histories = [model_1H18N_LR0_0003_history, model_1H18N_LR0_001_history, model_1H18N_LR0_01_history, model_1H18N_LR0_1_history]
metaData = [model_1H18N_LR0_0003_data, model_1H18N_LR0_001_data, model_1H18N_LR0_01_data, model_1H18N_LR0_1_data]
df = createDataFrame(metaData, histories)
print(df)
df.to_csv("model_tuning_batch_hpc/post_processing_learning_rate.csv")
Model_Type job_ID neurons learning_rate batch_size epoch loss \
0 lr0.0003-lr 8 [18] 0.0003 32 0 1.079636
1 lr0.0003-lr 8 [18] 0.0003 32 1 0.389714
2 lr0.0003-lr 8 [18] 0.0003 32 2 0.263422
3 lr0.0003-lr 8 [18] 0.0003 32 3 0.213203
4 lr0.0003-lr 8 [18] 0.0003 32 4 0.181573
.. ... ... ... ... ... ... ...
35 lr0.1-lr 11 [18] 0.1000 32 5 0.367467
36 lr0.1-lr 11 [18] 0.1000 32 6 0.438679
37 lr0.1-lr 11 [18] 0.1000 32 7 0.462358
38 lr0.1-lr 11 [18] 0.1000 32 8 0.378300
39 lr0.1-lr 11 [18] 0.1000 32 9 0.296862
accuracy val_loss val_accuracy
0 0.703846 0.525426 0.892120
1 0.918732 0.304252 0.936319
2 0.940873 0.233791 0.950344
3 0.952870 0.196049 0.957924
4 0.959389 0.169151 0.960524
.. ... ... ...
35 0.932652 0.280835 0.938901
36 0.926705 0.378289 0.936868
37 0.926994 0.239807 0.928885
38 0.934684 0.567724 0.931705
39 0.932217 0.383894 0.940640
Tuning Experiments, Part 3: Varying Batch Size
The accuracy and loss of each model will be compared while changing the ‘batch size’. For simplicity, all other parameters (e.g. learning rate, epochs, number of neurons, hidden layers) will be kept constant. The Baseline model will be included. Not every batch size is tested, so feel free to create new code cells with a different batch size. Recall that batch size is a hyperparameter that sets the number of samples used before updating the model.
model_1H18N_BS16 = NN_Model_1H(18,0.0003)
model_1H18N_BS16_history = model_1H18N_BS16.fit(train_features,
train_L_onehot,
epochs=10, batch_size=16,
validation_data=(test_features, test_L_onehot),
verbose=2)
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H18N_BS16_data = ('bs16-batch', 12, '[18]', 0.0003, 16, 10)
combine_plots(model_1H18N_BS16_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Epoch 1/10
13654/13654 - 19s - loss: 0.8238 - accuracy: 0.7727 - val_loss: 0.3322 - val_accuracy: 0.9270
Epoch 2/10
13654/13654 - 19s - loss: 0.2556 - accuracy: 0.9388 - val_loss: 0.2078 - val_accuracy: 0.9495
Epoch 3/10
13654/13654 - 19s - loss: 0.1765 - accuracy: 0.9567 - val_loss: 0.1512 - val_accuracy: 0.9634
Epoch 4/10
13654/13654 - 18s - loss: 0.1350 - accuracy: 0.9688 - val_loss: 0.1210 - val_accuracy: 0.9720
Epoch 5/10
13654/13654 - 19s - loss: 0.1113 - accuracy: 0.9748 - val_loss: 0.1021 - val_accuracy: 0.9772
Epoch 6/10
13654/13654 - 19s - loss: 0.0962 - accuracy: 0.9792 - val_loss: 0.0899 - val_accuracy: 0.9812
Epoch 7/10
13654/13654 - 19s - loss: 0.0851 - accuracy: 0.9815 - val_loss: 0.0809 - val_accuracy: 0.9824
Epoch 8/10
13654/13654 - 19s - loss: 0.0767 - accuracy: 0.9829 - val_loss: 0.0734 - val_accuracy: 0.9826
Epoch 9/10
13654/13654 - 19s - loss: 0.0701 - accuracy: 0.9847 - val_loss: 0.0680 - val_accuracy: 0.9862
Epoch 10/10
13654/13654 - 19s - loss: 0.0647 - accuracy: 0.9862 - val_loss: 0.0639 - val_accuracy: 0.9836
Exercises
Create additional code cells to run models (
1H18N) with larger batch sizes, e.g. 16, 32, 64, 128, 512, 1024, …). Remember that we just did an experiment with a batch size = 16.Model “1H18N” With Batch Size 32
#RUNIT model_1H18N_BS32 = NN_Model_1H(18,0.0003) model_1H18N_BS32_history = model_1H18N_BS32.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_BS32_data = ('bs32-batch', 13, '[18]', 0.0003, 32, 10) combine_plots(model_1H18N_BS32_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 10s - loss: 1.1029 - accuracy: 0.6803 - val_loss: 0.5063 - val_accuracy: 0.8949 Epoch 2/10 6827/6827 - 10s - loss: 0.3616 - accuracy: 0.9233 - val_loss: 0.2791 - val_accuracy: 0.9413 Epoch 3/10 6827/6827 - 10s - loss: 0.2377 - accuracy: 0.9498 - val_loss: 0.2081 - val_accuracy: 0.9534 Epoch 4/10 6827/6827 - 10s - loss: 0.1850 - accuracy: 0.9585 - val_loss: 0.1678 - val_accuracy: 0.9620 Epoch 5/10 6827/6827 - 10s - loss: 0.1517 - accuracy: 0.9653 - val_loss: 0.1397 - val_accuracy: 0.9675 Epoch 6/10 6827/6827 - 10s - loss: 0.1287 - accuracy: 0.9705 - val_loss: 0.1209 - val_accuracy: 0.9725 Epoch 7/10 6827/6827 - 10s - loss: 0.1129 - accuracy: 0.9741 - val_loss: 0.1079 - val_accuracy: 0.9737 Epoch 8/10 6827/6827 - 10s - loss: 0.1016 - accuracy: 0.9758 - val_loss: 0.0982 - val_accuracy: 0.9770 Epoch 9/10 6827/6827 - 10s - loss: 0.0929 - accuracy: 0.9772 - val_loss: 0.0905 - val_accuracy: 0.9770 Epoch 10/10 6827/6827 - 10s - loss: 0.0859 - accuracy: 0.9787 - val_loss: 0.0847 - val_accuracy: 0.9788
Model “1H18N” With Batch Size 64
#RUNIT model_1H18N_BS64 = NN_Model_1H(18,0.0003) model_1H18N_BS64_history = model_1H18N_BS64.fit(train_features, train_L_onehot, epochs=10, batch_size=64, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_BS64_data = ('bs64-batch', 14, '[18]', 0.0003, 64, 10) combine_plots(model_1H18N_BS64_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 3414/3414 - 6s - loss: 1.4388 - accuracy: 0.5565 - val_loss: 0.8041 - val_accuracy: 0.7991 Epoch 2/10 3414/3414 - 5s - loss: 0.5776 - accuracy: 0.8707 - val_loss: 0.4256 - val_accuracy: 0.9052 Epoch 3/10 3414/3414 - 5s - loss: 0.3546 - accuracy: 0.9216 - val_loss: 0.3060 - val_accuracy: 0.9325 Epoch 4/10 3414/3414 - 5s - loss: 0.2738 - accuracy: 0.9401 - val_loss: 0.2500 - val_accuracy: 0.9453 Epoch 5/10 3414/3414 - 5s - loss: 0.2294 - accuracy: 0.9504 - val_loss: 0.2141 - val_accuracy: 0.9519 Epoch 6/10 3414/3414 - 5s - loss: 0.1986 - accuracy: 0.9556 - val_loss: 0.1875 - val_accuracy: 0.9568 Epoch 7/10 3414/3414 - 5s - loss: 0.1750 - accuracy: 0.9597 - val_loss: 0.1665 - val_accuracy: 0.9613 Epoch 8/10 3414/3414 - 5s - loss: 0.1556 - accuracy: 0.9638 - val_loss: 0.1492 - val_accuracy: 0.9655 Epoch 9/10 3414/3414 - 5s - loss: 0.1399 - accuracy: 0.9671 - val_loss: 0.1350 - val_accuracy: 0.9674 Epoch 10/10 3414/3414 - 5s - loss: 0.1273 - accuracy: 0.9715 - val_loss: 0.1238 - val_accuracy: 0.9727
Model “1H18N” With Batch Size 128
#RUNIT model_1H18N_BS128 = NN_Model_1H(18,0.0003) model_1H18N_BS128_history = model_1H18N_BS128.fit(train_features, train_L_onehot, epochs=10, batch_size=128, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_BS128_data = ('bs128-batch', 15, '[18]', 0.0003, 128, 10) combine_plots(model_1H18N_BS128_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 1707/1707 - 4s - loss: 1.8142 - accuracy: 0.4222 - val_loss: 1.1781 - val_accuracy: 0.6165 Epoch 2/10 1707/1707 - 3s - loss: 0.9118 - accuracy: 0.7627 - val_loss: 0.7089 - val_accuracy: 0.8346 Epoch 3/10 1707/1707 - 3s - loss: 0.5814 - accuracy: 0.8680 - val_loss: 0.4835 - val_accuracy: 0.8870 Epoch 4/10 1707/1707 - 3s - loss: 0.4178 - accuracy: 0.8995 - val_loss: 0.3700 - val_accuracy: 0.9096 Epoch 5/10 1707/1707 - 3s - loss: 0.3344 - accuracy: 0.9209 - val_loss: 0.3081 - val_accuracy: 0.9280 Epoch 6/10 1707/1707 - 3s - loss: 0.2854 - accuracy: 0.9337 - val_loss: 0.2688 - val_accuracy: 0.9384 Epoch 7/10 1707/1707 - 3s - loss: 0.2521 - accuracy: 0.9426 - val_loss: 0.2398 - val_accuracy: 0.9471 Epoch 8/10 1707/1707 - 3s - loss: 0.2262 - accuracy: 0.9491 - val_loss: 0.2164 - val_accuracy: 0.9505 Epoch 9/10 1707/1707 - 3s - loss: 0.2052 - accuracy: 0.9528 - val_loss: 0.1972 - val_accuracy: 0.9536 Epoch 10/10 1707/1707 - 3s - loss: 0.1879 - accuracy: 0.9550 - val_loss: 0.1814 - val_accuracy: 0.9551
Model “1H18N” With Batch Size 512
#RUNIT model_1H18N_BS512 = NN_Model_1H(18,0.0003) model_1H18N_BS512_history = model_1H18N_BS512.fit(train_features, train_L_onehot, epochs=10, batch_size=512, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_BS512_data = ('bs512-batch', 16, '[18]', 0.0003, 512, 10) combine_plots(model_1H18N_BS512_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 427/427 - 1s - loss: 2.5478 - accuracy: 0.2648 - val_loss: 2.0955 - val_accuracy: 0.3152 Epoch 2/10 427/427 - 1s - loss: 1.8088 - accuracy: 0.4025 - val_loss: 1.5753 - val_accuracy: 0.4566 Epoch 3/10 427/427 - 1s - loss: 1.4084 - accuracy: 0.5331 - val_loss: 1.2653 - val_accuracy: 0.5890 Epoch 4/10 427/427 - 1s - loss: 1.1491 - accuracy: 0.6474 - val_loss: 1.0477 - val_accuracy: 0.6946 Epoch 5/10 427/427 - 1s - loss: 0.9598 - accuracy: 0.7376 - val_loss: 0.8844 - val_accuracy: 0.7828 Epoch 6/10 427/427 - 1s - loss: 0.8154 - accuracy: 0.8087 - val_loss: 0.7568 - val_accuracy: 0.8250 Epoch 7/10 427/427 - 1s - loss: 0.6995 - accuracy: 0.8407 - val_loss: 0.6515 - val_accuracy: 0.8484 Epoch 8/10 427/427 - 1s - loss: 0.6063 - accuracy: 0.8697 - val_loss: 0.5704 - val_accuracy: 0.8790 Epoch 9/10 427/427 - 1s - loss: 0.5349 - accuracy: 0.8828 - val_loss: 0.5077 - val_accuracy: 0.8848 Epoch 10/10 427/427 - 1s - loss: 0.4792 - accuracy: 0.8887 - val_loss: 0.4581 - val_accuracy: 0.8906
Model “1H18N” With Batch Size 1024
#RUNIT model_1H18N_BS1024 = NN_Model_1H(18,0.0003) model_1H18N_BS1024_history = model_1H18N_BS1024.fit(train_features, train_L_onehot, epochs=10, batch_size=1024, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_1H18N_BS1024_data = ('bs1024-batch', 17, '[18]', 0.0003, 1024, 10) combine_plots(model_1H18N_BS1024_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 214/214 - 1s - loss: 2.7688 - accuracy: 0.2434 - val_loss: 2.5636 - val_accuracy: 0.3167 Epoch 2/10 214/214 - 1s - loss: 2.3085 - accuracy: 0.3085 - val_loss: 2.0787 - val_accuracy: 0.3201 Epoch 3/10 214/214 - 1s - loss: 1.9158 - accuracy: 0.3856 - val_loss: 1.7679 - val_accuracy: 0.4188 Epoch 4/10 214/214 - 1s - loss: 1.6514 - accuracy: 0.4357 - val_loss: 1.5421 - val_accuracy: 0.4649 Epoch 5/10 214/214 - 1s - loss: 1.4515 - accuracy: 0.5100 - val_loss: 1.3691 - val_accuracy: 0.5613 Epoch 6/10 214/214 - 1s - loss: 1.2958 - accuracy: 0.5860 - val_loss: 1.2295 - val_accuracy: 0.6109 Epoch 7/10 214/214 - 1s - loss: 1.1667 - accuracy: 0.6487 - val_loss: 1.1110 - val_accuracy: 0.6735 Epoch 8/10 214/214 - 1s - loss: 1.0568 - accuracy: 0.6860 - val_loss: 1.0103 - val_accuracy: 0.7002 Epoch 9/10 214/214 - 1s - loss: 0.9632 - accuracy: 0.7167 - val_loss: 0.9237 - val_accuracy: 0.7638 Epoch 10/10 214/214 - 1s - loss: 0.8815 - accuracy: 0.7684 - val_loss: 0.8473 - val_accuracy: 0.8006
Post-Processing, Part 3: Varying Batch Size
Run post-processing for the batch size experiment, similar to prior post-processing.
histories = [model_1H18N_BS16_history, model_1H18N_BS32_history, model_1H18N_BS64_history, model_1H18N_BS128_history, model_1H18N_BS512_history, model_1H18N_BS1024_history]
metaData = [model_1H18N_BS16_data, model_1H18N_BS32_data, model_1H18N_BS64_data, model_1H18N_BS128_data, model_1H18N_BS512_data, model_1H18N_BS1024_data]
df = createDataFrame(metaData, histories)
print(df)
df.to_csv("model_tuning_batch_hpc/post_processing_batch_size.csv")
Model_Type job_ID neurons learning_rate batch_size epoch loss \
0 bs16-batch 12 [18] 0.0003 16 0 0.828373
1 bs16-batch 12 [18] 0.0003 16 1 0.297895
2 bs16-batch 12 [18] 0.0003 16 2 0.229140
3 bs16-batch 12 [18] 0.0003 16 3 0.195427
4 bs16-batch 12 [18] 0.0003 16 4 0.171447
.. ... ... ... ... ... ... ...
55 bs1024-batch 17 [18] 0.0003 1024 5 1.236131
56 bs1024-batch 17 [18] 0.0003 1024 6 1.110678
57 bs1024-batch 17 [18] 0.0003 1024 7 1.004388
58 bs1024-batch 17 [18] 0.0003 1024 8 0.913309
59 bs1024-batch 17 [18] 0.0003 1024 9 0.834383
accuracy val_loss val_accuracy
0 0.781142 0.374539 0.920078
1 0.928939 0.256096 0.936228
2 0.938955 0.211726 0.942910
3 0.944590 0.183946 0.948861
4 0.952266 0.162939 0.958748
.. ... ... ...
55 0.604936 1.171473 0.628131
56 0.649965 1.057130 0.667973
57 0.688997 0.959385 0.708693
58 0.742320 0.875020 0.753515
59 0.787193 0.801499 0.796012
Tuning Experiments, Part 4: Varying the Number of Hidden Layers
The accuracy and loss of each model will be compared while changing the ‘number of hidden layers’. For simplicity, all other parameters (e.g. learning rate, epochs, batch size, number of neurons) will be kept constant. Not every number of hidden layers is tested, so feel free to create new code cells with a different number of layers. Increasing the number of hidden layers increases the complexity of the model. The number of hidden layers can be referred to as the “depth” of the model.
def NN_Model_2H(hidden_neurons_1,sec_hidden_neurons_1, learning_rate):
"""Definition of deep learning model with one dense hidden layer"""
model = Sequential([
# More hidden layers can be added here
Dense(hidden_neurons_1, activation='relu', input_shape=(19,),
kernel_initializer='random_normal'), # Hidden Layer
Dense(hidden_neurons_1, activation='relu',
kernel_initializer='random_normal'), # Hidden Layer
Dense(18, activation='softmax',
kernel_initializer='random_normal') # Output Layer
])
adam_opt = Adam(lr=learning_rate, beta_1=0.9, beta_2=0.999, amsgrad=False)
model.compile(optimizer=adam_opt,
loss='categorical_crossentropy',
metrics=['accuracy'])
return model
#RUNIT
# the model with 18 neurons in the hidden layer
model_2H18N18N = NN_Model_2H(18,18,0.0003)
model_2H18N18N_history = model_2H18N18N.fit(train_features,
train_L_onehot,
epochs=10, batch_size=32,
validation_data=(test_features, test_L_onehot),
verbose=2)
# metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_2H18N18N_data = ('2H18N18N-layers', 18, '[18, 18]', 0.0003, 32, 10)
combine_plots(model_2H18N18N_history,
plot_loss, plot_acc,
loss_epoch_shifts=(0, 1), loss_show=False,
acc_epoch_shifts=(0, 1), acc_show=False)
Epoch 1/10
6827/6827 - 11s - loss: 1.0831 - accuracy: 0.6562 - val_loss: 0.4132 - val_accuracy: 0.8996
Epoch 2/10
6827/6827 - 10s - loss: 0.3015 - accuracy: 0.9291 - val_loss: 0.2294 - val_accuracy: 0.9455
Epoch 3/10
6827/6827 - 11s - loss: 0.1911 - accuracy: 0.9538 - val_loss: 0.1598 - val_accuracy: 0.9605
Epoch 4/10
6827/6827 - 10s - loss: 0.1413 - accuracy: 0.9648 - val_loss: 0.1254 - val_accuracy: 0.9696
Epoch 5/10
6827/6827 - 10s - loss: 0.1136 - accuracy: 0.9722 - val_loss: 0.1035 - val_accuracy: 0.9770
Epoch 6/10
6827/6827 - 10s - loss: 0.0941 - accuracy: 0.9776 - val_loss: 0.0871 - val_accuracy: 0.9800
Epoch 7/10
6827/6827 - 10s - loss: 0.0789 - accuracy: 0.9812 - val_loss: 0.0741 - val_accuracy: 0.9839
Epoch 8/10
6827/6827 - 10s - loss: 0.0661 - accuracy: 0.9846 - val_loss: 0.0615 - val_accuracy: 0.9862
Epoch 9/10
6827/6827 - 10s - loss: 0.0552 - accuracy: 0.9876 - val_loss: 0.0529 - val_accuracy: 0.9892
Epoch 10/10
6827/6827 - 10s - loss: 0.0476 - accuracy: 0.9899 - val_loss: 0.0476 - val_accuracy: 0.9892
Exercises
Create additional code cells to run models (
3H18N18N18N).Solutions
def NN_Model_3H(hidden_neurons_1,hidden_neurons_2, hidden_neurons_3, learning_rate): """Definition of deep learning model with one dense hidden layer""" model = Sequential([ # More hidden layers can be added here Dense(hidden_neurons_1, activation='relu', input_shape=(19,), kernel_initializer='random_normal'), # Hidden Layer Dense(hidden_neurons_2, activation='relu', kernel_initializer='random_normal'), # Hidden Layer Dense(hidden_neurons_3, activation='relu', kernel_initializer='random_normal'), # Hidden Layer Dense(18, activation='softmax', kernel_initializer='random_normal') # Output Layer ]) adam_opt = Adam(lr=learning_rate, beta_1=0.9, beta_2=0.999, amsgrad=False) model.compile(optimizer=adam_opt, loss='categorical_crossentropy', metrics=['accuracy']) return model#RUNIT model_3H18N18N18N = NN_Model_3H(18,18,18,0.0003) model_3H18N18N18N_history = model_3H18N18N18N.fit(train_features, train_L_onehot, epochs=10, batch_size=32, validation_data=(test_features, test_L_onehot), verbose=2) # metadata for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch) model_3H18N18N18N_data = ('3H18N18N18N-layers', 19, '[18, 18, 18]', 0.0003, 32, 10) combine_plots(model_3H18N18N18N_history, plot_loss, plot_acc, loss_epoch_shifts=(0, 1), loss_show=False, acc_epoch_shifts=(0, 1), acc_show=False)Epoch 1/10 6827/6827 - 12s - loss: 1.1242 - accuracy: 0.6479 - val_loss: 0.5027 - val_accuracy: 0.8687 Epoch 2/10 6827/6827 - 12s - loss: 0.3823 - accuracy: 0.9136 - val_loss: 0.3072 - val_accuracy: 0.9347 Epoch 3/10 6827/6827 - 12s - loss: 0.2567 - accuracy: 0.9467 - val_loss: 0.2181 - val_accuracy: 0.9569 Epoch 4/10 6827/6827 - 11s - loss: 0.1887 - accuracy: 0.9587 - val_loss: 0.1631 - val_accuracy: 0.9622 Epoch 5/10 6827/6827 - 12s - loss: 0.1415 - accuracy: 0.9641 - val_loss: 0.1224 - val_accuracy: 0.9670 Epoch 6/10 6827/6827 - 12s - loss: 0.1097 - accuracy: 0.9725 - val_loss: 0.0974 - val_accuracy: 0.9765 Epoch 7/10 6827/6827 - 12s - loss: 0.0903 - accuracy: 0.9794 - val_loss: 0.0822 - val_accuracy: 0.9818 Epoch 8/10 6827/6827 - 12s - loss: 0.0783 - accuracy: 0.9826 - val_loss: 0.0730 - val_accuracy: 0.9839 Epoch 9/10 6827/6827 - 12s - loss: 0.0685 - accuracy: 0.9844 - val_loss: 0.0667 - val_accuracy: 0.9841 Epoch 10/10 6827/6827 - 12s - loss: 0.0615 - accuracy: 0.9858 - val_loss: 0.0595 - val_accuracy: 0.9833
Post-Processing, Part 4: Varying Layers
This was executed similar to before.
# Baseline model with be the same as before, but with different meta-data
# meta data for the model - (Model_Type, job_ID, neurons, learning_rate, batch_size, epoch)
model_1H18N_data = ('1H18N-layers', 20, '[18]', 0.0003, 32, 10)
model_1H18N_history = model_1H_history
histories = [model_2H18N18N_history, model_3H18N18N18N_history, model_3H18N18N18N_history, model_1H18N_history]
metaData = [model_2H18N18N_data, model_3H18N18N18N_data, model_3H18N18N18N_data, model_1H18N_data]
df = createDataFrame(metaData, histories)
print(df)
df.to_csv("model_tuning_batch_hpc/post_processing_layers.csv")
Model_Type job_ID neurons learning_rate batch_size \
0 2H18N18N-layers 18 [18, 18] 0.0003 32
1 2H18N18N-layers 18 [18, 18] 0.0003 32
2 2H18N18N-layers 18 [18, 18] 0.0003 32
3 2H18N18N-layers 18 [18, 18] 0.0003 32
4 2H18N18N-layers 18 [18, 18] 0.0003 32
.. ... ... ... ... ...
35 1H18N-layers 20 [18] 0.0003 32
36 1H18N-layers 20 [18] 0.0003 32
37 1H18N-layers 20 [18] 0.0003 32
38 1H18N-layers 20 [18] 0.0003 32
39 1H18N-layers 20 [18] 0.0003 32
epoch loss accuracy val_loss val_accuracy
0 0 0.927647 0.723704 0.385758 0.926761
1 1 0.274070 0.942869 0.214439 0.955453
2 2 0.184902 0.959297 0.164910 0.962154
3 3 0.147150 0.966241 0.135143 0.967775
4 4 0.122181 0.970590 0.113795 0.970778
.. ... ... ... ... ...
35 5 0.175589 0.955186 0.165275 0.955416
36 6 0.156900 0.962085 0.149082 0.961440
37 7 0.142371 0.966150 0.135986 0.964937
38 8 0.130184 0.969203 0.124366 0.967976
39 9 0.119313 0.972064 0.113934 0.970998
CHALLENGE QUESTION
(Optional, challenging) Try to vary the number of neurons in the hidden layers
(add / subtract as needed) and check the results.
Remember to follow the metadata schema, ensuring that the job_ID is unique
and the Model_Type is input correctly.
Additional Tuning Opportunities
There are other hyperparameters that can be adjusted, including changing:
- Optimizer (try optimizers other than
Adam) - Activation function (this is actually a part of the network’s architecture)
We encourage you to explore the effects of changing these in your network.
Summary
Iterative model tuning - adjusting the model (i.e. set of hyperparameters) to achieve the best performance is an important and laborous process. By going through this notebook it will be obvious that creating a deep learning experiment using the jupyter notebook will get messy and laborious. By the end of this module, you will learn how to utilize scripting as well as using the power of HPC to alleviate the pain of executing block by block of jupyter notebook and make this experiment fast.
How was the experiment of model tuning so far? Frustrating? Confusing? So, let’s be honest, any machine learning experiment is going to have some level of uncertainty when dealing with unseen data. Especially when you don’t know how your model will respond to your features. This makes the model tuning process a messy process! In this notebook, by learning about different neural networks hyperparameters and tuning some of them, including hidden layers, hidden neurons, learning rate, etc., we tried to monitor the effects on accuracy. These accuracy results were also visualized graphically and saved to csv format for later.
Post-analysis and take-aways from these experiments are located in a later lesson. The post-analysis takes the post-processing model output and metadata and utilizes plots to track how increasing or decreasing the value of one hyperparameter affects the model’s accuracy.
Now, I want to shift your attention from the model tuning process to the platform in which we did our experiment. The jupyter notebook is an excellent platform to create code, experiment on and get the results. but I don’t know about you but for me, the single cell to single cell execution of commands seems tedious. In the beginning of this notebook I have touched on how doing experiments like we did so far can get messy in jupyter notebook. So, I highly recommend to do such experiments with scripting.
In the next lesson, we will touch on how you can convert an existing Jupyter notebook to a Python script that can be executed by HPC without constant interaction from the user.
Further Research: - Super-convergence - Learning Rate vs. Batch Size
Key Points
Neural network models are tuned by tweaking the architecture and tuning the training hyperparameters.